PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G303300.1.p
Common NamePRUPE_ppa019718mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 463aa    MW: 51428.7 Da    PI: 7.7929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G303300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Prupe.6G303300.1.p 14 KGLWSPEEDDKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP

2Myb_DNA-binding44.92.7e-1467110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Prupe.6G303300.1.p  67 RGPFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                         89********************.*********.*********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.745961IPR017930Myb domain
SuperFamilySSF466891.07E-2912108IPR009057Homeodomain-like
SMARTSM007175.2E-131363IPR001005SANT/Myb domain
PfamPF002496.1E-161461IPR001005SANT/Myb domain
CDDcd001671.29E-111761No hitNo description
PROSITE profilePS5129425.12962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565116IPR009057Homeodomain-like
SMARTSM007171.2E-1266114IPR001005SANT/Myb domain
PfamPF002493.6E-1367110IPR001005SANT/Myb domain
CDDcd001672.47E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDDKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS EVLDQDDKEI SKLSPTYKSN EKASVGSNEL NLAEAVNSKP PAVSENRYPV  180
EVSSSSKVLN NNSNNGSSSS SKNLTAVNPP TQEFFLDRAC TTSHEGSTSS CRPYDLVGYF  240
SFHQNQSNYG SDMGLAVNPN TTFSFLNQNP RSSEMLPVDF SSSMTPSLLP TMSSSSSIFT  300
TPPTRVKPSI SLPSDNSSTW DSNTFSNNGN RSSSSNMELQ SNNNNNNSNS FFDSSAAAFS  360
WGLPEPVKSD DAEEIKWSEY LHSPFLMGTT TTAIQNHHQA FQHNNTYTHD QVKPETSQFL  420
SNSSSATTTT STWHHQNQQA FQASEMCTKD LQRLAVAFGQ TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207615.10.0hypothetical protein PRUPE_ppa019718mg
TrEMBLM5W5300.0M5W530_PRUPE; Uncharacterized protein
STRINGPOPTR_0013s00290.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108333103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.15e-97myb domain protein 61